PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G208800.1.p
Common NameGLYMA_12G208800, LOC100796390
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 344aa    MW: 37159.8 Da    PI: 6.7084
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G208800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.52.8e-3522123295
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssaseceaesssssasns 85 
                          +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++      +       +a++ +++++n+
  Glyma.12G208800.1.p  22 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLGELppwhptP------NTAADAENNNNNN 105
                          79**************************************************************5543221......2222222222222 PP

                  TCP  86 ssg........kaaksaa 95 
                          ++g        ++++s+ 
  Glyma.12G208800.1.p 106 NAGssdmaiaaEQSESSG 123
                          222234454442222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-3222127IPR005333Transcription factor, TCP
PROSITE profilePS5136932.5372482IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGMKSTGGEI VQVQGGHIVR STGRKDRHSK VYTAKGPRDR RVRLSAHTAI EFYDVQDRLG  60
YDRPSKAVDW LIKKAKNAID KLGELPPWHP TPNTAADAEN NNNNNNAGSS DMAIAAEQSE  120
SSGYNFQLQR QLGEDHDNHH SAFIPSPIDT DAIAFFPTTT ATSSINFQTY PPNIISRTNN  180
STEDLGLSLH SFQDPGLIHG QTQAGANQTQ TPSNDQSLFS GSTQVGFEAN YPRIVTWNSD  240
ASIDMNRTGF MVNSPALLGQ GGSAAFSQRG TLQSSFSPSL RPWSEIPMAS SEHHKSQPIQ  300
QASIFGSRFL SDALPGFCIP ARIQGEDGVG PDKPSSSSPN SHH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540389.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR52e-69TCP4_ARATH; Transcription factor TCP4
TrEMBLI1LUK90.0I1LUK9_SOYBN; Uncharacterized protein
STRINGGLYMA12G33640.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-67TCP family protein